Jay and I discussed this. While it is past the deadline, he is not the only person who was unaware of it, given that it was communicated poorly and last-minute. He was very clear about the strategy behind the decision whether or not to sign Pujols, and in my judgment, it was a reasonable one and would've wholly depended on him knowing the deadline.
More importantly, Pujols isn't hurt or anything, so he obviously hasn't gained anything from waiting the extra days.
If anyone has any concerns about this, feel free to post them publicly or privately.